[README.TXT]: INSTRUCTIONS FOR [NRR_SMITH] PACKAGE

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RUNNING THE CODE:
====================================================

The main functions to run are (see more on this in November report draft):

<build_1d_model.m>
<eval_1d_app_model_obj_fn.m> 

Simulations are better controlled from:

<run_model_opt.m>



====================================================
STRUCTURE OF THIS PACKAGE:
====================================================

/DUPLICATES contains some functions that are similar. These are arranged by commonality.

/MARSLAND_DAVIES contains functions initially built by Rhodri Davies and Stephen Marsland.

/PREVIOUS_REVISIONS contains older versions of this package.

/REDUNDANCY	contains files that are believed to be useless at present.

/REPORT currently contains Katherine Smith's report draft.

/IRRELEVANT includes functions that have little or none to do with the project.



====================================================
FUNCTIONS INCLUDED IN THIS PACKAGE:
====================================================

In the main directory:
----------------------------------------------------

   average_smooth.m            build_1d_model.m
   construct_model_example.m   cps_warp_1d.m
   discrepancy_image_1d.m      gaussian_smooth.m
   eval_mi_cps_warp.m          eval_msd.m
   eval_msd_cps_warp.m         eval_msd_linear_warp.m
   eval_msd_multi_warp.m       find_generalisability.m
   find_linear_warp.m          find_specificity.m         
   is_invalid.m                linear_warp.m
   make_1d_images.m            make_combined_model.m
   measure_model.m             test_examples.m
   measure_model_msd.m         msd.m
   normalise_to_bounds.m       perturb_points.m
   perturb_points_cps.m        poor_linear_warp.m
   run_model_opt.m             setup_grid.m
   show_combined_model.m       show_intensity_model.m
   show_shape_model.m          show_spec_v_modes.m


Under [Redundancy]:
----------------------------------------------------

   build_1d_model_2_bump.m


Under [Irrelevant]:
----------------------------------------------------

   show_brain_and_pts.m
   show_n_brains.m
   

Under [Marsland_Davies]:
----------------------------------------------------

   green_1d.m
   mi.m
   minka.m
   nmi.m
   nrr_trans_1d.m


Under [Duplicates]:
----------------------------------------------------

   To be updated



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RSS 27/11/03